PUBLICATIONS
2017

Antonelli, A. (2017) Comparative biogeography, big data, and common myths. In: Tropical Plant Collections: Legacies from the Past? Essential Tools for the Future? Edited by I. Friis and H. Balslev. Scientia Danica. Series B, Biologica, vol. 6. ISSN 1904-5484. ISBN 978-87-7304-407-0

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Nieto Blazquez, E., Antonelli, A., Roncal, J. (in press) Historical Biogeography of endemic seed plant genera in the Caribbean: did GAARlandia play a role? Ecology and Evolution.

Eriksson, J.S., de Sousa, F., Bertrand, Y.J.K., Antonelli, A., Oxelman, B., Pfeil, B.E. (accepted pending minor revision) Allele phasing is critical to revealing a shared allopolyploid origin of Medicago arborea and M. strasseri (Fabaceae). BMC Evolutionary Biology

Rønsted, N., Antonelli, A., Maldonado, C., Hansen, S.H. (2017) Jagten på Kinabarken til behandling av malaria. Aktuel Naturvidenskab 3: 32-36.

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Pessoa, M.C.R, Persson, C., Antonelli, A., Barbosa, M.R.V. (2017) First record of Chomelia triflora (J.H. Kirkbr.) Delprete & Achille (Rubiaceae) from Brazil. Check List 13(4): 159-162. https://doi.org/10.15560/13.4.159

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Jaramillo, C., Montes, C., Cardona, A., Silvestro, D., Antonelli, A., Bacon, C.D. (2017) Comment (1) on “Formation of the Isthmus of Panama” by O’Dea et al. Science Advances, doi: 10.1126/sciadv.1602321

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Lehtonen, S., Silvestro, D., Karger, D.N., Scotese, C., Tuomisto, H., Kessler, M., Peña, C., Wahlberg, N., Antonelli, A. (2017) Environmentally driven extinction and opportunistic origination explain fern diversification patterns. Scientific Reports, doi: 10.1038/s41598-017-05263-7

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Pimiento, C., Griffin, J.N., Clements, C.F., Silvestro, D., Varela, S., Uhen, M.D., Jaramillo, C. (2017) The Pliocene marine megafauna extinction and its impact on functional diversity. Nature Ecology & Evolution, doi: 10.1038/s41559-017-0223-6

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Rova, J., Persson, C., Ljungstrand, E. & Antonelli A. (2017) Lectotypification of Pentagonia macrophylla (Rubiaceae) revisited. Phytotaxa, doi: 10.11646/phytotaxa.311.3.10

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Cámara-Leret, R., Faurby, S., Macía, M. J., Balslev, H., Göldel, B., Svenning, J.-C., Kissling, W. D., Rønsted, N. & Saslis-Lagoudakis, C. H. (2017) Fundamental species traits explain provisioning services of tropical American palms. Nature Plants 3:16220, doi: 10.1038/nplants.2016.220

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Pedersen, R.Ø., Faurby, S., Svenning, J.-C. (2017) Shallow size-density relations within mammal clades suggest greater intra-guild ecological impact of large-bodied species. Jounral of Animal Ecology, doi: 10.1111/1365-2656.12701

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Sandom, C.J., Faurby, S., Svenning, J.C., Burnham, D., Dickman, A., Hinks, A., Macdonald, E.A., Ripple, B., Williams, J., Macdonald, D. (2017) Learning from the past to prepare for the future: Felids face continued threat from declining prey richness. Ecography, doi: 10.1111/ecog.03303

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Claudel, C., Buerki, S., Chatrou, L.W., Antonelli, A., Alvarez, N., Hetterscheid, W. (2017) Large-scale phylogenetic analysis of Amorphophallus (Araceae) derived from nuclear and plastid sequences reveals new subgeneric delineation. Botanical Journal of the Linnean Society 184(1):32-45, doi: 10.1093/botlinnean/box013

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Gonçalez, V.M., Pfeil, B.E., Antonelli, A., Duarte, M.C. (2017) Two new species of Pavonia (Malvoideae, Malvaceae) from southern Bahia, Brazil. Phytotaxa 305(2):97-103, doi: 10.11646/phytotaxa.305.2.3

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Antonelli, A. (2017) Drivers of bioregionalisation. Nature Ecology and Evolution 1, 0114 (2017) | DOI: 10.1038/s41559-017-0114.

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*Antonelli, A., *Hettling, H., Condamine, F.L., Vos, K., Nilsson, R. H., Sanderson, J., Sauquet, H., Scharn, R., Silvestro, D., Töpel, M., Bacon, C.D., Oxelman, B., *Vos, R. A. (2017) Towards a Self-Updating Platform for Estimating Rates of Speciation and Migration, Ages, and Relationships of Taxa. Systematic Biology 66(2):152–166, doi: 10.1093/sysbio/syw066

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Edler, D., Guedes, T., Zizka, A. Rosvall, M. Antonelli, A. (2017) Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions. Systematic Biology 66(2):197–204, doi: 10.1093/sysbio/syw087

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Perez-Escobar, O.A., Chomicki, G., Condamine, F.L., Karremans, A.P., Bogarin, D., Matzke, N., Silvestro, D., Antonelli, A. (2017). Recent origin of Neotropical orchids in the world’s richest plant biodiversity hotspot. New Phytologist, doi:10.1111/nph.14629.

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Ritter, C.D., McGrate, G., Nilsson, R.H., Fearnside, P.M., Palme, U., Antonelli, A. (2017) Environmental Impact Statement of biodiversity: Challenges and prospects in biologically diverse environments in Brazilian Amazonia. Biological Conservation 206:161–168

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Hagen, O., Andermann, T., Quental, T.B., Antonelli, A., Silvestro, D. (accepted pending minor revisions). Bayesian Estimation of Age-dependent Extinction from Incomplete Fossil Data. Systematic Biology

Bacon, C.D., Moraes, M., Jaramillo, C., Antonelli, A. (2017). Endemic palm species shed light on habitat shifts and the assembly of the Cerrado and Restinga floras. Molecular Phylogenetics and Evolution 110:127-133.

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*Töpel, M., *Zizka, A., Calió, M.F., Scharn, R., Silvestro, D., Antonelli, A. (2017)SpeciesGeoCoder: Fast categorization of species occurrences for analyses of biodiversity, biogeography, ecology and evolution. Systematic Biology 66(2):145–151,doi:10.1093/sysbio/syw064

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Cruz, G.A.S., Zizka, G., Silvestro, D., Leme, E.M.C., Schulte, K. & Benko-Iseppon, A.M. (2017) Molecular phylogeny, character evolution and historical biogeography of Cryptanthus Otto & A. Dietr. (Bromeliaceae). Molecular Phylogenetics and Evolution, 107, 152-165.

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Maldonado, C., Persson, C., Alban, J., Antonelli, A., Rønsted, N. (2017) Cinchona anderssonii (Rubiaceae), a new overlooked species from Bolivia. PhytoTaxa, 297 (2), 203–208.

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Maldonado, C., Barnes, C.J., Cornett, C., Holmfred, E., Hansen, S.H., Persson, C., Antonelli, A., Rønsted, N. (2017) Phylogeny Predicts the Quantity of Antimalarial Alkaloids Within the Iconic Yellow Cinchona Bark (Rubiaceae: Cinchona calisaya). Frontiers in Plant Science 8:391.

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2016

Antonelli, A., Perrigo, A. (2016) Urbanization: factor in biological impact. Nature 540:39. doi:10.1038/540039a

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Zizka, A., ter Steege, H., Pessoa, M.C.R, Antonelli, A. (2016, in press) Finding needles in the haystack: Where to look for rare species in the American tropics? Ecography

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Silvestro, D., Pires, M.M., Quental, T.B. & Salamin, N. (2016, in press) Bayesian estimation of multiple clade competition from fossil data. Evolutionary Ecology Research

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Mekkerdchoo, O., chaleeda Borompichaichartkul, C., Perrigo, A.L., Srzednicki, G., Prakitchaiwattana, C., Antonelli A. (2016, in press). Tracing the Evolution and Economic Potential of Konjac Glucomannan in Amorphophallus species (Araceae) using Molecular Phylogeny and RAPD Markers. Phytotaxa 282 (2): 081–106.

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Barrett, C.F., Bacon, C.D., Antonelli, A. , Cano, A., Hofmann, T. (2016). An introduction to plant phylogenomics with a focus on palms. Botanical Journal of the Linnean Society 182, 234–255.

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Bacon, C.D., Velásquez-Puentes, F., Flórez-Rodríguez, A., Balslev, H., Galeano, G., Bernal, R., Antonelli, A. (2016). Phylogenetics of Iriarteeae (Arecaceae), cross-Andean disjunctions and convergence of clustered infructescence morphology in Wettinia. Botanical Journal of the Linnean Society 182, 272–286.

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Bacon, C.D., Look, S.L., Gutiérrez–Pinto, N., Antonelli, A. , Tan, H.T.W., Kumar, P., Guan, S.L., Dransfield, J, Baker, W.J. (2016). Species limits, geographical distribution and genetic diversity in Johannesteijsmannia (Arecaceae). Botanical Journal of the Linnean Society 182, 318–347.

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Sanín, M. J. Kissling, W.D., Bacon, C.D. , Borchsenius, F., Galeano, G., Svenning, J., Olivera, J., Ramírez, R., Trénel, P., Pintaud, J. (2016).The Neogene rise of the tropical Andes facilitated diversification of wax palms (Ceroxylon: Arecaceae) through geographical colonization and climatic niche separation. Botanical Journal of the Linnean Society 182, 303–317.

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Restrepo Correa, Z., Nunez Avellanada, L.A., Gonzalez-Caro, S., Velasquez-Puentes, F., Bacon, C.D. (2016). Exploring palm-insect interactions across geographic and environmental gradients. Botanical Journal of the Linnean Society 182, 389–397.

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Raia, P., Carotenuto, F., Mondanaro, A., Castiglione, S., Passaro, F., Saggese, F., Melchionna, M., Serio, C., Alessio, L., Silvestro, D. & Fortelius, M. (2016) Progress to extinction: increased specialisation causes the demise of animal clades. Scientific Reports, 6

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Abarenkov, K., Adams, R.I., Irinyi, L., Agan, A., Ambrosio, E., Antonelli A., Bahram, M., Bengtsson-Palme, J., Bok, G., Cangren, P., Coimbra, V., Coleine, C., Gustafsson, C., He, J., Hofmann, T., Kristiansson, E., Larsson, E., Larsson, T., Liu, Y., Martinsson, S., Meyer, W., Panova, M., Pombubpa, N., Ritter, C., Ryberg, M., Svantesson, S., Scharn, R., Svensson, O., Töpel, M., Unterseher, M., Visagie, C., Wurzbacher, C., Taylor, A.F.S., Kõljalg, U., Schriml, L., Nilsson, R.H. (2016) Annotating public fungal ITS sequences from the built environment according to the MIxS-Built Environment standard – a report from a May 23-24, 2016 workshop (Gothenburg, Sweden). MycoKeys 16: 1-15. doi: 10.3897/mycokeys.16.10000

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Bacon, C.D.,Look, S.L., Gutiérrez-Pinto, N., Antonelli, A., Tan, H.T.W., Kumar, P., Guan, S.L., Dransfield, J., Baker, W.J. (2016, in press) Species limits, geographical distribution and genetic diversity in Johannesteijsmannia (Arecaceae). Botanical Journal of the Linnean Society.

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Barnes, C.J., Maldonado, C., Frøslev, T.G., Antonelli, A., Rønsted, N. (2016, in press) Unexpectedly high beta-diversity of root-associated fungal communities in the Bolivian Andes. Frontiers in Microbiology 7:1377. DOI:10.3389/fmicb.2016.01377

ter Steege, H., Vaessen, R. W., Cárdenas-López, D., Sabatier, D., Antonelli, A., Mota de Oliveira, S., Pitman, N.C.A., Møller Jørgensen, P., & Salomão, R.P. (2016) The discovery of the Amazonian tree flora with an updated checklist of all known tree taxa. Nature Scientific Reports 6, 29549.

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*Kostikova, A., *Silvestro, D., Pearman, P. B., Salamin N. (2016) Bridging inter- and intraspecific trait evolution with a hierarchical Bayesian approach. Systematic Biology, doi: 10.1093/sysbio/syw010.

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Gjesfjeld, E., Chang, J., Silvestro, D., Kelty, C., Alfaro M. E. (2016) Competition and extinction explain the evolution of diversity in American automobiles. Palgrave Communications 2, 16019, doi:10.1057/palcomms.2016.19

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De Baets, K., Antonelli, A., Donoghue, P. Tectonic blocks and molecular clocks. (2016) Philosophical Transactions B 371: 20160098.

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Nilsson R. H., Wurzbacher C., Bahram M., Coimbra V. R. M., Larsson E., Tedersoo L., Eriksson J., Duarte Ritter C., Svantesson S., Sánchez-García M., Ryberg M., Kristiansson E., Abarenkov K. (2016) Top 50 most wanted fungi. MycoKeys 12: 29-40. doi: 10.3897/mycokeys.12.7553

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Bacon, C.D., Molnar, P., Antonelli, A., Crawford, A.J., Montes, C., Vallejo-Pareja, M.C. (2016) Quaternary glaciation and the Great American Biotic Interchange. Geology. doi:10.1130/G37624.1.

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Lagomarsino, L.P., Condamine, F.L., Antonelli, A., Mulch, A., Davis, C.C. (2016) The abiotic and biotic drivers of rapid diversification in Andean bellflowers (Campanulaceae). New Phytologist. doi:10.1111/nph.13920.

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Silvestro, D., Zizka, A., Bacon, C.D., Cascales-Miñana, B., Salamin, N., Antonelli, A. (2016) Fossil biogeography: a new model to infer dispersal, extinction and sampling from palaeontological data. Philosophical Transactions of the Royal Society B 371:1691, doi:10.1098/rstb.2015.0225.

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Condamine, F.L., Leslie, A.B., Antonelli, A. (2016) Ancient islands acted as refugia and pumps for conifer diversity. (2016) Cladistics 1-24, doi:10.1111/cla.12155.

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Silva, G.A.R., Jojima, C., Moraes, E.M., Antonelli, A., Manfrin, M.H., Franco, F.F. (2016) Intra and interspecific sequence variation in closely related species of Cereus (CACTACEAE) Biochemical Systematics and Ecology 65 137-142.

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Bacon, C.D., Simmons, M.P., Archer, R.H., Zhao, L., Andriantiana, J. (2016) Biogeography of the Malagasy Celastraceae: Multiple independent origins followed by widespread dispersal of genera from Madagascar. Molecular Phylogenetics and Evolution 94 365–382.

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Bacon, C.D. Velasquez-Puentes, F., Florez-Rodriguez, A., Balslev, H., Galeano, G., Bernal, R., Antonelli, A. (2016). Phylogeny of Iriarteeae palms, cross-Andean disjunctions, and multiple origins of infructescence morphology in Wettinia. Botanical Journal of the Linnean Society. DOI: 10.1111/boj.12421.

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Barrett, C.F., Bacon, C.D., Antonelli, A. Cano, A., Hofmann, T. (2016) An introduction to plant phylogenomics, with a focus on palms. Botanical Journal of the Linnean Society.DOI: 10.1111/boj.12399.

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Antonelli, A. (2016) Neotropical biogeography: Possible goals and challenges for the next ten years. [in Portuguese] in: Biogeografia da América do Sul / Análise de Tempo, Espaço e Forma. Edited by C.J.B. de Carvalho & E.A.B. Almeida. Rio de Janeiro: Roca. pp 279-288.

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Fiaschi, P., Pirani, J. R., Heiden, G., Antonelli, A. (2016) Floristic biogeography of South America. [in Portuguese] in: Biogeografia da América do Sul / Análise de Tempo, Espaço e Forma. Edited by C.J.B. de Carvalho & E.A.B. Almeida. Rio de Janeiro: Roca. pp 215-226.

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2015

Edler, D., Guedes, T., Zizka, A. Rosvall, M. Antonelli, A. (2015) Infomap Bioregions: Interactive mapping of biogeographical regions from species distributions. arXiv:1512.00892

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Bacon, C.D., Silvestro, D., Jaramillo, C., Smith, B.T., Chakrabarty, P., Antonelli, A. (2015) Reply to Lessios and Marko et al.: Early and progressive migration across the Isthmus of Panama is robust to missing data and biases. Proceedings of the National Academy of Sciences of the USA doi:10.1073/pnas.1515451112.

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Antonelli, A. (2015) Multiple origins of mountain life. Nature doi:10.1038/nature14645

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Bacon, C.D., Silvestro, D., Jaramillo, C., Smith, B.T., Chakrabarty, P., Antonelli, A. (2015) Biological evidence supports an early and complex emergence of the Isthmus of Panama. Proceedings of the National Academy of Sciences of the USA 112 (19): 6110–6115.

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Silvestro, D., Antonelli, A., Salamin, N., Quental, T.B. (2015) The role of clade competition in the diversification of North American canids. Proceedings of the National Academy of Sciences of the USA. Doi:10.1073.

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Vilhena, D., Antonelli, A. (2015) A network approach for identifying and delimiting biogeographical regions. Nature communications 6, 6848

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*Antonelli A, *Zizka A, Silvestro D, Scharn R, Cascales-Miñana B and Bacon CD (2015). An engine for global plant diversity: Highest evolutionary turnover and emigration in the American tropics. Frontiers in Genetics 6:130. doi: 10.3389/fgene.2015.00130

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Maldonado, C., C. Molina, A. Zizka, C. Persson, Taylor, C., J. Alban, E. Chilquillo, N. Rønsted, Antonelli A (2015). Estimating species diversity and distribution in the era of Big Data: To what extent can we trust public databases? Global Ecology and Biogeography. DOI: 10.1111/geb.12326

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Zhang, Q., Feild, T.S., Antonelli, A. (2015) Assessing the impact of phylogenetic incongruence on taxonomy, floral evolution, biogeographical history, and phylogenetic diversity. American Journal of Botany 102(4):566-580

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Zizka A, Thiombiano A, Dressler S, Nacoulma BMI, Ouédraogo A, Ouédraogo I, Ouédraogo O, Zizka G, Hahn K & Schmidt M (2015) Traditional plant use in Burkina Faso (West Africa): a national-scale analysis with focus on traditional medicine.

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Wüest, R., Antonelli, A., Zimmermann, N., Linder, H.P. (2015) Available climate regimes drive niche diversification in grasses during range expansion. The American Naturalist 185:5.

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Fiaschi, P.; Heiden, G.; Antonelli, A. & Pirani, J.R. (2015): South American Vegetation Types. Figshare.

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*Silvestro, D., *Cascales-Miñana, B., Bacon, C.D., Antonelli, A. (2015) Revisiting the origin and diversification of vascular plants through a comprehensive Bayesian analysis of the fossil record. New Phytologist 207, 425-436. Doi: 10.1111/nph.13247

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Schwartz, T., Nylinder, S., Ramadugu, C., Antonelli, A., Pfeil, B.E. (2015) The origin of oranges: a multi-locus phylogeny of Rutaceae subfamily Aurantioideae. Systematic botany 40(4): pp. 1053–1062. DOI 10.1600/036364415X690067.

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Lagomarsino, L., Antonelli, A., Muchhala, N., Mathews, S., Davis, C. C. (2015) Phylogeny, classification, and fruit evolution of the species-rich Neotropical bellflowers (Campanulaceae: Lobelioideae). American Journal of Botany, 101:2097-2112

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Silvestro D., Kostikova A., Litsios G., Pearman P. B., Salamin N. (2015) Measurement errors should always be incorporated in phylogenetic comparative analysis. Methods in Ecology and Evolution 6:3, pp 340-346, DOI: 10.1111/2041-210X.12337

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Couvreur, T.L.P., Kissling, W.D., Condamine, F.L., Svenning, J-C., Rowe, N.P., Baker, W.J. (2015) Global diversification of a tropical plant growth form: environmental correlates and historical contingencies in climbing palms. Frontiers in Genetics 5:452. doi: 10.3389/fgene.2014.00452

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2014

Guedes, T.B., Nogueira, C., Marques, O.A.V. (2014) Diversity, natural history, and geographic distribution of snakes in the Caatinga, Northeastern Brazil. Zootaxa 3863(1): 001-093.

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Silvestro D, Salamin N, Schnitzler J. (2014) PyRate: a new program to estimate speciation and extinction rates from incomplete fossil data. Methods in Ecology and Evolution 5: 1126-1131.

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Guedes, T.B., Sawaya, R.J., Nogueira, C.C. (2014) Biogeography, vicariance and conservation of snakes of the neglected and endangered Caatinga region, north-eastern Brazil. Journal of Biogeography 41: 919-931.

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Masters JC, Génin F, Silvestro D, Lister AM, DelPero M. 2014. The red island and the seven dwarfs: body size reduction in Cheirogaleidae. Journal of Biogeography 41(10): 1833-1847.

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Kergoat, G.J., Bouchard, P., Clamens, A.L., Abbate, J.L., Jourdan, H., Jabbour-Zahab, R., Genson, G., Soldati, L., Condamine, F.L. (2014) Cretaceous environmental changes led to high extinction rates in a hyperdiverse beetle family. BMC Evolutionary Biology 14:220, doi: 10.1186/s12862-014-0220-1.

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Linder, H.P., Rabosky, D.L., Antonelli, A., Wüest, R.O., Ohlemüller, R. (2014) Disentangling the influence of climatic and geological changes on species radiations. Journal of Biogeography; doi: 10.1111/jbi.12312

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Nilsson R.H., Hyde K.D., Pawlowska J., Ryberg M., Tedersoo L., Aas A.B., Alias S.A., Alves A., Anderson C.L., Antonelli A., Arnold A.E., Bahnmann B., Bahram M., Bengtsson-Palme J., Berlin A., Branco S., Chomnunti P., Dissanayake A., Drenkhan R., Friberg H., Frøslev T.G., Halwachs B., Hartmann M., Henricot B., Jayawardena R., Jumpponen A., Kauserud H., Koskela S., Kulik T., Liimatainen K., Lindahl B., Lindner D., Liu J-K., Maharachchikumbura S., Manamgoda D., Martinsson S., Neves M.A., Niskanen T., Nylinder S., Pereira O.L., Pinho D.B., Porter T.M., Queloz V., Riit T., Sanchez-García M., de Sousa F., Stefaczyk E., Tadych M., Takamatsu S., Tian Q., Udayanga D., Unterseher M., Wang Z., Wikee S., Yan J., Larsson E., Larsson K-H., Kõljalg U., Abarenkov K. (2014) Improving ITS sequence data for identification of plant pathogenic fungi. Fungal Diversity 67:1,11-19; DOI: 10.1007/s13225-014-0291-8.

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Silvestro, D., Schnitzler, J., Liow, L.H., Antonelli, A. , Salamin, N. (2014) Bayesian Estimation of Speciation and Extinction from Incomplete Fossil Occurrence Data. Systematic Biology; doi: 10.1093/sysbio/syu006

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Rolland, J., Condamine, F.L., Jiguet, F., Morlon, H. (2014) Faster Speciation and Reduced Extinction in the Tropics Contribute to the Mammalian Latitudinal Diversity Gradient. PLOS Biology 12(1): 1-11.

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2013

Bacon, C.D.,. (2013) Biome evolution and biogeographical change through time. Frontiers of biogeograpy 5(4): 227–231.

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Dawson, M.N., Algar, A.C., Antonelli, A., Dávalos, L.M., Davis, E., Early, R., Guisan, A., Jansson, R., Lessard, J-P., Marske, K.A., McGuire, J.L., Stigall, A.L., Swenson, N.G., Zimmermann, N.E., & Gavin, D.G. (2013) A horizon scan of Biogeography. Frontiers of Biogeography 5(2):130-157.

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Fernandes, A.M.,. (2013) Fine-scale endemism of Amazonian birds in a threatened Landscape. Biodiversity and Conservation 22(11): 2683–2694.

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Fernandes, A.M., Gonzalez, J., Wink, M., & Aleixo, A. (2013) Multilocus phylogeography of the Wedge-billed Woodcreeper Glyphorynchus spirurus (Aves, Furnariidae) in lowland Amazonia: Widespread cryptic diversity and paraphyly reveal a complex diversification pattern. Molecular Phylogenetics and Evolution 66 (1): 270-282.

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Bacon, C.D., Michonneau, F., Henderson, A.J., McKenna, M.J., Milroy, A.M., & Simmons, M.P. (2013) Geographic and taxonomic disparities in species diversity: dispersal and diversification rates across Wallace's line. Evolution 67 (7): 2058-2071.

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Hoorn, C., Mosbrugger, V., Mulch, A., Antonelli, A. (2013) Biodiversity from Mountain Building. Nature Geoscience 6:154.

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Schirrmeister, B.E., de Vos, J., Antonelli, A., & Bagheri, H.C. (2013) Evolution of multicellularity coincided with increased diversification of cyanobacteria and the Great Oxidation Event. Proceedings of the National Academy of Sciences of the USA 110(5): 1791-1796.

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H. P. Linder, Antonelli, A., Pirie, M. D., A. M. Humphreys, R. O. Wüest (2013) What determines biogeographical ranges? Historical wanderings and ecological constraints in the danthonioid grasses. Journal of Biogeography 40(5): 821–834.

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Hughes, C., Pennington, R.T., Antonelli, A., (2013). Neotropical Plant Evolution: Assembling the Big Picture. Botanical Journal of the Linnean Society 171:1-18.

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Note: This is the first out of 17 articles and reviews published in a special volume under the same title, edited by A. Antonelli, C. E. Hughes, R. T. Pennington and M. F. Fay. The whole volume is Open Access and can be found here.

2012

Groppo, M., Kallunki, J.A., Pirani, J.R., Antonelli, A., (2012) Chilean Pitavia more closely related to Oceania and Old World Rutaceae than to Neotropical groups: evidence from two cpDNA non-coding regions, with a new subfamilial classification of the family. PhytoKeys 19:9-29.

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Fernandes, A.M., Wink, M., & Aleixo, A. (2012) Phylogeography of the chestnut-tailed antbird (Myrmeciza hemimelaena) clarifies the role of rivers in Amazonian biogeography. Journal of Biogeography 39 (8): 1524–1535.

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Pirie, M. D., A. M. Humphreys, A. Antonelli, C. Galley, and H. P. Linder. 2012. Model uncertainty in ancestral area reconstruction: A parsimonious solution? Taxon 61:652-664.

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Töpel, M., Antonelli, A., Yesson, C., Eriksen, B. (2012) Past Climate Change and Plant Evolution in Western North America: A Case Study in Rosaceae. PLoS One 7:e50358.

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Petri, A., Antonelli, A. (2012) Suckulenter. Göteborgs botaniska trädgårds förlag. ISBN 978-91-87068-53-9

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2011

C. Hoorn, F.P. Wesselingh, H. ter Steege, M. A. Bermudez, A. Mora, J. Sevink, I. Sanmartín, A. Sanchez-Meseguer, C. L. Anderson, J. Figueiredo, C. Jaramillo, D. Riff, F. R. Negri, H. Hooghiemstra, J. Lundberg, T. Stadler, T. Sarkinen, A. Antonelli (2011) Origins of Biodiversity–Response. Science 331: 399-400.

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Antonelli, A. , Sanmartín, I. (2011) Mass Extinction, Gradual Cooling, or Rapid Radiation? Reconstructing the Spatiotemporal Evolution of the Ancient Angiosperm Genus Hedyosmum (Chloranthaceae) Using Empirical and Simulated Approaches. Systematic Biology 60:596-615.

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Schirrmeister, B.E., Anisimova, M., Antonelli, A. , & Bagheri, H.C. 2011. Evolution of cyanobacterial morphotypes: Taxa required for improved phylogenomic approaches. Communicative & Integrative Biology 4:424-427.

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Zhang, Q., Antonelli, A. , Feild, T.S., & Kong, H.-Z. 2011. Revisiting taxonomy, morphological evolution, and fossil calibration strategies in Chloranthaceae. Journal of Systematics and Evolution 49:315–329.

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Humphreys, A.M., Antonelli, A. , Pirie, M.D., Linder, H.P. (2011) Ecology and evolution of the diaspore ‘burial syndrome’. Evolution 65:1163-1180.

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Antonelli, A., Sanmartín, I. (2011) Why are there so many plant species in the Neotropics? Taxon 60:403-414.

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Antonelli, A. , Humphreys, A.M., Lee, W.G., Linder, H.P. (2011) Absence of mammals and the evolution of New Zealand grasses. Proceedings of the Royal Society Series B: Biological Sciences 278:695-701.

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Bytebier, B.,Antonelli, A. , Bellstedt, D.U., Linder, P. (2011) Estimating the age of fire in the Cape Flora of South Africa from an orchid phylogeny. Proceedings of the Royal Society Series B: Biological Sciences 278:188-195.

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Schirrmeister, B., A. Antonelli , and H. Bagheri. 2011. The origin of multicellularity in cyanobacteria. BMC Evolutionary Biology 11:45.

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Bartish, I.V., Antonelli, A. , Richardson, J.E., Swenson, U. (2011) Vicariance or long-distance dispersal: historical biogeography of the pantropical subfamily Chrysophylloideae (Sapotaceae). Journal of Biogeography 38:177-190.

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2010

C. Hoorn, F.P. Wesselingh, H. ter Steege, M. A. Bermudez, A. Mora, J. Sevink, I. Sanmartín, A. Sanchez-Meseguer, C. L. Anderson, J. Figueiredo, C. Jaramillo, D. Riff, F. R. Negri, H. Hooghiemstra, J. Lundberg, T. Stadler, T. Sarkinen, A. Antonelli (2010) Amazonia through time: Andean uplift, climate change, landscape evolution and biodiversity. Science 330:927-931.

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Antonelli, A. , Verola, C.F., Parisod, C. Gustafsson, A.L.S. (2010) Climate cooling promoted the expansion and radiation of a threatened group of South American orchids (Epidendroideae:Laeliinae). Biological Journal of the Linnean Society 100(3):596-606.

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Gustafsson, A.L.S., Verola, C.F., Antonelli, A. (2010) Reassessing the temporal evolution of orchids with new fossils and a Bayesian relaxed clock, with implications for the diversification of the rare South American genus Hoffmannseggella (Orchidaceae: Epidendroideae). BMC Evolutionary Biology 10:177.

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Antonelli, A. , Quijada-Masareñas, A., Crawford, A.J., Bates, A.J., Velazco, J.M., Wüster, W. (2010) Molecular studies and phylogeography of Amazonian tetrapods and their relation to geological and climatic models. in: Amazonia, Landscape and Species Evolution, 1st edition. Edited by C. Hoorn and F.P. Wesselingh. Blackwell Publishing, ISBN 9781405181136.

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Wesselingh, F. P., Hoorn, C., Kroonenberg, S.B., Antonelli, A. , Lundberg, J.G., Vonhof, H.B., and Hooghiemstra, H. (2010). On the origin of Amazonian landscapes and biodiversity: a synthesis. in: Amazonia, Landscape and Species Evolution, 1st edition. Edited by C. Hoorn and F.P. Wesselingh. Blackwell Publishing, ISBN 9781405181136.

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Groppo, M., Fiaschi, P., Salatino, M.L.F., Ceccantini, G.T., Santos, F.A.R., Verola, C., Antonelli, A. (2010) Placement of Kuhlmanniodendron Fiaschi & Groppo in Lindackerieae (Achariaceae, Malpighiales) confirmed by analyses of rbcL sequences, with notes on pollen and wood anatomy. Plant systematics and evolution 286:27–37.

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2009

Antonelli, A. , Nylander, J.A.A., Persson, C., Sanmartín, I. (2009) Tracing the impact of the Andean uplift on Neotropical plant evolution. Proceedings of the National Academy of Sciences of the USA 106(24): 9749-9754.

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Antonelli, A. (2009) Have giant lobelias evolved several times independently? Life form shifts and historical biogeography of the cosmopolitan and highly diverse subfamily Lobelioideae (Campanulaceae). BMC Biology 7:82, 21 pp.

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Antonelli, A. , Dahlberg, C.J., Karlgren, K.H.I., Appelqvist, T. (2009) Pollination of the Lady’s slipper orchid (Orchidaceae: Cypripedium calceolus) in southern Scandinavia: taxonomic and conservational aspects. Nordic Journal of Botany 27: 266–273.

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Antonelli, A. , Rodriguez, V. (2009) Brazil Should Facilitate Research Permits. Conservation Biology 23(5):1068-1069.

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Eriksson, K.M., Antonelli, A. , Clarke, A.K., Blanck, H. (2009) A phylogenetic approach to detect selection on the target site of the antifouling compound irgarol 1051 in tolerant periphyton communities. Environmental Microbiology 11(8): 2065-2077.

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Rodriguez, V., Antonelli, A. (2009) Gaining access to biological material from Brazil. Taxon 58(3):1025.

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2008

Antonelli, A. (2008) Higher level phylogeny and evolutionary trends in Campanulaceae subfam. Lobelioideae: Molecular signal overshadows morphology. Molecular Phylogenetics and Evolution 46 (1):1-18.

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2007

Hallenberg, N., Henrik Nilsson, R., Antonelli, A. , Wu, S.H.,Maekawa, N., Nordén, B. (2007) The Peniophorella praetermissa species complex (Basidiomycota). Mycological Research 111: 1366-1376.

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Verola, C.F., Semir, J., Antonelli, A. , Koch, I. (2007) Biosystematic studies in Brazilian endemic genus Hoffmannseggella H.G.Jones (Orchidaceae: Laeliinae): a multiple approach applied to conservation. Lankesteriana 7 (1-2): 419-422.

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2005

Andersson, L., Antonelli, A. (2005) Phylogeny of the tribe Cinchoneae (Rubiaceae), its position in Cinchonoideae, and description of a new genus, Ciliosemina. Taxon 54 (1):17-28.

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